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Shopify Fees Calculator: What You’ll Actually Pay in 2025

By Tracy NgMay 16, 202520 min read
Shopify Fees Calculator: What You’ll Actually Pay in 2025

Running a Shopify store comes with more than just the monthly subscription. This guide will act as your Shopify fees calculator - explaining all the fees you’ll encounter including payment processing, transaction charges, and optional add-ons. As a result, you can calculate your real costs and plan your store budget with confidence.

Two of Shopify’s Core Fees Explained

Understanding Shopify’s core fees is crucial to running a profitable store. Shopify charges a variety of fees, including transaction fees, payment processing fees, and more. Below is a breakdown of the two main fees you’ll encounter in this Shopify fees calculator breakdown:

1. Shopify Pricing Plans 

Shopify offers four pricing plans, each with different features and costs. Here’s a quick look at what each plan offers and the pricing:

A table of Shopify Monthly Pricing Plan to demonstrate Shopify Fees
Shopify Pricing Plan for 2025

When Should You Upgrade Your Shopify Plan?

The choice of which Shopify plan to use depends on your store’s revenue and needs. Here’s a rough guide to when it might make sense to upgrade:

  • Upgrade to Shopify: If your annual revenue is around $130,000, you’ll benefit from lower transaction fees and additional features like gift cards and better reporting.
  • Upgrade to Advanced Shopify: If your revenue exceeds $1 million, the Plus plan offers more detailed reports and lower processing fees, making it a more cost-effective option.

2. Shopify Transaction Fees

Shopify charges transaction fees when you use a third-party payment provider like PayPal or Amazon Pay. However, these fees depend on which Shopify plan you’re subscribed to:

Shopify Plan

Transaction Fee

Basic

2.0%

Grow

1.0%

Advanced

0.6%

Plus

Competitive rate for high-volume merchants

Note: These fees are waived if you use Shopify Payments, Shopify's built-in payment processor, which can save you money.

Shopify Payments Fees

If you use Shopify Payments, you don’t have to pay the additional transaction fees from above. However, Shopify still charges processing fees for each sale:

Shopify Plan

Processing Fee

Basic

2.9% + 30¢

Grow

2.6% + 30¢

Advanced

2.4% + 30¢

Plus 

2.4% + 30¢

These processing fees are lower than the fees from third-party payment providers, making Shopify Payments a cost-effective option for most store owners.

PayPal & Other Payment Gateway Fees

If you choose to use PayPal or another third-party payment provider, you'll pay their standard transaction fees, which are typically 2.9% + 30¢ per transaction. If you don't use Shopify Payments, you'll also incur Shopify’s transaction fees depending on your plan. This can make your overall payment processing more expensive.

In summary, understanding these core fees and comparing Shopify’s plans will help you determine which plan is best suited for your business and budget. By choosing the right payment provider and plan, you can optimize your costs and maximize profitability.

Common Hidden Shopify Fees (That Add Up Quietly)

While Shopify’s monthly plans and transaction fees are well-known, there are a few costs that many first-time sellers don’t realize until they’ve already launched. These aren't meant to scare you off - they’re just important to factor into your budget early so you can plan smarter.

1. Theme & Design Fees

Shopify offers several free themes (like Dawn), which are a great starting point. But if you want more customization or a premium design, paid themes can cost a one-time fee of $180–$350. These premium themes may come with extra features that help with conversion, like advanced filtering or dynamic sections.

Tip: Stick with a free theme until you're generating steady revenue - many stores hit 4-figure months without ever upgrading.

2. App Subscription Costs

Apps help you add new features to your store—like upsells, reviews, live chat, or email popups. Some are free, but many work on monthly subscriptions ranging from $5 to $50+ per app. It’s easy to go over budget if you install too many at once.

Tip: Choose only the tools that directly support sales or customer trust. Tools like Kudosi Product Reviews offer free plans and high ROI.

3. Email Marketing & SMS Fees

Email and SMS are powerful tools for bringing customers back—but they’re rarely free beyond the first few emails. Tools like Shopify Email give you 10,000 free emails/month, then charge a small fee per extra 1,000 emails. SMS platforms (like SMSBump or Klaviyo SMS) also charge based on message volume and country.

Tip: Start with email first (it’s cheaper), and only move into SMS when you're seeing consistent traffic.

4. Domain Name & Renewal Charges

If you want your store to look professional, you’ll need a custom domain (like yourstore.com). Shopify domains typically cost $14/year, and renewals happen automatically unless you cancel.

Tip: You can also buy a domain from a third-party provider like Namecheap or Google Domains and connect it to Shopify.

5. Fulfillment & 3PL Expenses

If you scale beyond dropshipping—or use a print-on-demand or fulfillment service—you may incur costs for packing, storage, and shipping. These vary widely based on weight, location, and provider. Even with dropshipping, you’ll want to budget for refunds, reships, and occasional losses.

Tip: Start lean with dropshipping and track your cost per order. If it makes sense later, explore using a 3PL or local warehouse.

Shopify Pricing Calculator based on Store Size 

Monthly Shopify Fee for Store Making Under $1,000/month

Cost Type

Estimated Cost (Monthly)

Shopify Basic Plan

$39

Shopify Payments Fees

2.9% + 30¢ → ~$20 for $500 via SP

PayPal Fees + Transaction

2.9% + 30¢ + 2% Shopify fee → ~$35

Apps (2 free + 1 paid)

$15

Email (Shopify Email)

Free for up to 10,000 emails

Domain Name (Annualized)

~$1.20 (based on $14/year)

Total Estimated Monthly

~$110

Good for testing ideas with minimal risk. Focus on organic traffic and free tools.

Monthly Shopify Fee for Store Making $5K–$10K/month

Cost Type

Estimated Cost (Monthly)

Shopify Grow Plan

$65 

Shopify Payments Fees

2.6% + 30¢ → ~$130 for $5K SP revenue

PayPal + Transaction Fees

2.9% + 30¢ + 1% Shopify fee → ~$160

Apps (3–5 essential tools)

$50–$100

Email Marketing

~$20–$50 (Klaviyo or Shopify Email)

SMS (Optional)

$10–$30 if used

Domain Name (Annualized)

~$1.20

Total Estimated Monthly

~$310–$460

This is the stage where investing in paid tools, faster support, and email automations starts to pay off.

Monthly Shopify Fee for Store Making $50K+/month

Cost Type

Estimated Cost (Monthly)

Shopify Advanced Plan

$399

Shopify Payments Fees

2.4% + 30¢ → ~$1,300 on $25K via SP

PayPal + Transaction Fees

2.9% + 30¢ + 0.5% Shopify fee → ~$1,450

Apps & Integrations

$150–$300 (custom reporting, upsells, etc.)

Email & SMS

$100–$300 (depending on list size)

Fulfillment/3PL Costs

Varies ~$3,000+ if using warehouse/shipping

Domain + Theme Costs

$1.20 + optional theme amortization

Total Estimated Monthly

~$6,400–$7,500+

At this scale, it’s critical to track your costs in real time. Even small fee reductions can save thousands.

Why Does This Breakdown of Shopify Fee Calculator Matters?

Understanding these core fees and comparing Shopify’s plans will help you determine which plan is best suited for your business and budget. By choosing the right payment provider and plan, you can optimize your costs and maximize profitability - especially when you factor in your margins using a reliable profit margin calculator in your growth stage.

TrueProfit dashboard showing net profit, cost breakdowns, and a performance graph to help Shopify store owners automatically track profits without using spreadsheets.
TrueProfit's Dashboard

This is where TrueProfit comes in. It’s a powerful Shopify profit tracker app designed specifically for Shopify store owners who want to take control of their finances. With real-time, automated insights, TrueProfit simplifies the complexity of your store’s data and helps you track what truly matters: your net profit.

Instead of sifting through endless spreadsheets and metrics, TrueProfit delivers accurate, actionable insights that allow you to make smarter decisions, improve profitability, and grow your business - without the guesswork.

Start optimizing your store’s financial health today with TrueProfit and ensure every dollar spent is working for your success.

TrueProfit Shopify Profit Tracker

Understanding Shopify fees is crucial for managing your store’s profitability. A reliable Shopify fees calculator helps you estimate costs accurately and plan better. Use it regularly to stay on top of expenses and make informed pricing decisions.

avatar
Tracy Ng

Senior Content Executive at TrueProfit & SEO/Content Specialist

Tracy is a senior content executive at TrueProfit – specializing in helping eCommerce businesses scale profitably through content. She has over 4 years of experience in eCommerce and digital marketing editorial writing. She develops high-impact content that helps thousands of Shopify merchants make data-driven, profit-focused decisions.

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